DABS (Data and Bioinformation Stuff) Volume 1 Issue 2: Spotlight on DMPTool

The Center for Data and Bioinformation Services (CDABS) is the University of Maryland Health Sciences and Human Services Library hub for data and bioinformation learning, services, resources, and communication.   

At least once a month, we will use this space to talk about a useful tool or resource. This month’s spotlight is on DMPTool, a free online platform offering templates and guidance from major funders on writing data management plans (DMPs). UMB is now a participating institution in DMPTool. A major benefit of this affiliation for researchers is that it gives you the ability to request personalized feedback on your plans from the CDABS team from within the platform. In the near future, additional features will be available, including single sign-on with your UMB credentials, and templates and guidance geared specifically toward the UMB community.

A data management plan is a key component of all research projects. You may be required to include one as part of a grant, but even when not required, having a DMP is a great way to help everyone in your lab have the same understanding and expectations surrounding your project data. A good DMP will explain what data is being collected or generated, how it is being described, collected, and secured, and how and when the data will be accessed and preserved after the project’s completion.

To get started writing data management plans with DMPTool, go to https://dmptool.org/, select Option 1 under Sign In, and type “Baltimore” in the search bar, then select “University of Maryland, Baltimore (umaryland.edu)“. If you already have an account with DMPTool, you can edit your account profile to list UMB as your organization.

To learn more about writing data management plans with DMPTool, sign up for our upcoming online workshop:
Writing Data Management Plans with DMPTool
Thursday, January 21 @ 12:00PM
Workshop description: Researchers, do you have an upcoming grant application that requires you to write a data management or data sharing plan? Are you striving to maintain well-organized research projects? In this workshop, we will cover the components of good data management plans with a particular eye toward NIH data sharing requirements. Participants will also be introduced to DMPTool, an online platform which provides plan templates and guidance from most major funders. Additionally, we will be providing participants with time during the workshop to work on plans for their own projects and ask questions and receive guidance from the instructors. sign up

Questions?
Contact: Amy Yarnell, Data Services Librarian and Jean-Paul Courneya, Bioinformationist — at data@hshsl.umaryland.edu.

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HSHSL Closed 1/18 in Honor of MLK Day

Martin Luther King Day

The HSHSL will be closed on Monday, January 18, 2021 in honor of the Dr. Martin Luther King Day holiday.

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DABS (Data and Bioinformation Stuff)

The Center for Data and Bioinformation Services (CDABS) is the University of Maryland Health Sciences and Human Services Library hub for, data and bioinformation learning, services, resources, and communication.   

This is the first issue of our blog. It contains links worth your time from all over the web focused on what we do best – data and bioinformation. We will provide links to tutorials, training opportunities, software packages, interviews with experts, data sources and more! 

  1. Wired magazine interview with Dr. Eric Green,  head of the National Human Genomics Research Institute (NHGRI), about the future of Genomics. (8 minute read): https://www.wired.com/story/30-years-since-the-human-genome-project-began-whats-next/  
  2. The Missing Semester of Your CS Education. Learn how to master the command-line, use a powerful text editor, use fancy features of version control systems, and much more! (11 lectures + 11 Hours YouTube course): https://missing.csail.mit.edu/ 
  3. Propel Postdoctoral Scholars Program new @Stanford School of Medicine aims to  1) attract and train talented postdocs who would bring diversity (broadly defined) to both their training program and to the professoriate in the life sciences, including from backgrounds or perspectives typically underrepresented in the life sciences, 2) provide postdoctoral funding support and professional development programs that will prepare individuals to assume leadership roles as faculty in academia, and, in so doing, 3) champion a culture of belonging and inclusion in science and academia, within and beyond Stanford. The application deadline is February 8, 2021. (10 minute read): https://propel.stanford.edu/ 
  4. Retrieve genome data by BioProject using the datasets and dataformatcommand-line tools by providing a BioProject accession. (5 minute read): https://www.ncbi.nlm.nih.gov/datasets/docs/command-line-start/
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Submit your story to UnMasking a Pandemic: Stories from UMB during COVID-19

Happy New Year!  Last year brought unimaginable events: a deadly pandemic, civil and racial unrest, a tumultuous election.  As we look forward to 2021 with new goals and a hope for a better year ahead it is a good time to reflect on the last year and the COVID-19 Pandemic that continues to threaten our health and lives.

Print of Coronavirus with embroidered spikesSince June, the Historical Collections Department of the Health Sciences and Human Services Library has been collecting campus reactions to the pandemic as well as personal stories and reflections of the campus community.  The project, UnMasking a Pandemic: Stories from UMB during COVID-19, has received seven submissions since its launch.  Submissions have included diary-like reflections, poetry, photographs, and original artwork.

Historical Collections continues to solicit submissions for this project.  The hope is to capture the personal and professional stories of our campus community.  As we approach almost a year of teleworking, social distancing, wearing masks, and an unusual holiday season the HSHSL would like to encourage new submissions to this project. 

Looking for inspiration? 

  • Check out the existing submissions in the UMB Digital Archive.
  • Reflect on this past holiday season:
    • Perhaps you worked in the hospitals helping care for COVID-19 patients?
    • Maybe you missed visits with family and friends to keep loved ones safe?
    • Did you create new holiday traditions safely at home?
  • Look back on the fall semester:
    • What was it like to learn and teach entirely online?
    • What was it like to graduate virtually?
    • How did midterms and finals differ for you?
  • Look forward to the spring semester:
    • What are your expectations for the spring?
    • How is what you experienced in the fall semester helping you as you move forward?
    • Perhaps you are a new student, what is it like to start a program virtually?

Questions or concerns should be addressed to Tara Wink, Historical Collections Librarian and Archivist.

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Common Holiday Spices, Flavors, and Nuts and their Traditional Medicinal Qualities

Series of botanical plates including water chestnut,  coffee, flax, juniper, and aloe.

The Health Sciences and Human Services Library Historical Collections’ strives to provide broad access to our diverse collections both in person and digitally. Materials in our collections appear as they originally were published or created and may contain offensive or inappropriate language or images and may be offensive to users. The University of Maryland, Baltimore does not endorse the views expressed in these materials. Materials should be viewed in the context in which they were created.

The holiday and winter seasons have common ingredients, usually with bold, warming flavors.  The holiday bread, cookie, and cake recipes call for spices and flavorings like nutmeg, ginger, vanilla, and clove or nuts like walnuts and almonds.  Historically however, these ingredients were prescribed for a variety of ailments in botanicals and herbals.

Like the post highlighting medicinal uses for winter fruits, this post will look at common holiday spices, flavorings, and nuts found in William Woodville’s Medical Botany and Robert Bentley’s Medicinal Plants. Both men were botanists from England and both works are found in the HSHSL’s Historical Collections.  Woodville’s volumes were published in the 1790s, while Bentley’s volumes were published nearly a decade later in 1880 and are digitized in the UMB Digital Archive. Read on to see how these comforting holiday flavors were once used for very different purposes.

Common Holiday Spices

llicium anisatum

Common name: Star-Anise or Skimmi in Japan

Botanical drawing of star anise, has leaves, flowers, short stem and large drawing of star anise fruitIllicium anisatum is a small tree that blossoms from January to April and is native to Japan.  The tree was cultivated in China and introduced in England in 1842.  The fruit, called “star-anise,” has eight or nine points forming a star shape.  The fruit is dried to sell and has a pleasant aromatic odor; the taste is a mixture of fennel and anise or black licorice.  An oil, called oil of anise or oleum badiani, is produced from the tree.

The oil was used as an expectorant, used in lozenges for coughs.  Star-anise was prescribed to help with stomach gases, to promote milk secretion in lactating mothers, to help children with colic, and as a cathartic.  Additionally, star-anise was used in medicine for cattle.  As it is used today, the oil and fruit from Illicium anisatum were also used for flavor to hide other medicines or in spirits.

Myristica fragrans

Common name: Nutmeg

Botanical drawing of nutmeg, has stem, leaves, fruit, dissection of fruit showing nutmegMyristica fragrans is a small evergreen tree that produces fruit the size of a small pear. The seed of the fruit is known as “nutmeg.”  The tree was native to Moluccas (Maluku Islands) and Indian Islands, Amboyna Island, Bouro (Portugal), New Guinea, the Philippines, Bencoolen (British East India Company), Penang Island, Singapore, Mauirtius, West Indies, and South America.  The tree was introduced to Europe in 1795. The fruit harvest occurred from September to December as well as April to June. 

Nutmeg has a strong, pleasant aroma and a warm, bitter taste.  It was used medicinally as a stimulant and for stomach issues and was used to treat mild cases of diarrhea, flatulent colic, and dyspepsia. In large doses it was found to be a narcotic. It was most used to cover the bad taste of other medicines or as a condiment. 

Caryophyllus aromaticus

Common name: Clove Tree

Botanical drawing of clove branch, showing leaves, flowers and clove spiceCaryophyllus aromaticus is a small tree native of the East Indies, Moluccas (Maluku Islands), and New Guinea.  According to Woodville, Dutch traders were rumored to have clove trees outside of their jurisdiction destroyed to hold a monopoly on the clove trade.  This confined the trees to the Island of Ternate controlled by the Dutch.  The Dutch monopoly ended in 1770 when clove and nutmeg trees were brought to the Isle of France, Bourbon, and Seickelles.

Clove is aromatic with a hot and spicey flavor.  It was traditionally preserved by immersing the clove in boiling water, fumigating it, and then exposing it to the sun to dry out.  Clove is a powerful stimulant for muscular fibres.  It was used in some cases to treat atonic gout.

 

Rosmarinus officinalis

Common name: Rosemary

Botanical drawing of rosemary with twigs, leaves, and flowersRosmarinus officinalis is a small shrub native to the Mediterranean. The shrub was also commonly found near the coast in warm, dry, hilly areas in Spain and Asia Minor and in Northern Africa, reaching to Madeira and the Canary Islands.  It flowers in April and May.  Rosemary is aromatic and has a warm, bitter taste.  The flavor and scent are strongest when the plant is fresh; both are impaired when the plant is dried.

Oleum Rosmarini or “oil of rosemary” was produced from the plant, with similar scents and tastes and was commonly used externally with other substances to stimulate the growth of hair or in lotions for its pleasant scent.  Rosemary has stimulant and carminative properties.  The plant was prescribed to stimulate or increase menstruation.  The leaves could be used as a tea and was prescribed for hypochondriacal people and dyspeptics.   Finally, rosemary was given to help with hysteria and nervous headaches.

Common Holiday Flavors

Zingiber officinale

Common name: Ginger

Botanical drawing of ginger root, with flower, and green shootsZingiber officinale is a perennial herb.  Ginger has a large underground stem, known as a rhizome. It is tough, pale yellow, covered with pale silvery-brown skin, with persistent roundish joints and numerous roots.  Ginger is native to tropical Asia and abundant in the West Indies.  It was exported to Europe sometime in the seventeenth century.

There are varieties of ginger depending on where it is grown: Jamaica, Cochin, Bengal, and Africa.  Ginger is prescribed in two forms in the British Pharmacopoeia and Pharmacopoeia of India: coated or unscraped and uncoated or scraped.  When used internally, ginger was a stimulant and used in the treatment of stomach pain.  Ginger was also prescribed for external use to dilate capillaries and improve circulation, sometimes to relieve headaches and toothaches. Ginger was also prescribed for atonic dyspepsia and as an addition to other medicines to correct stomach pain.

Vanilla planifolia

Common name: Vanilla or Baynilla (in Mexico)

Botanical drawing of vanilla plant with leaves, vanilla pod, flowersVanilla planifolia is a succulent. It is a dark green perennial climber that grows from five to six inches long.  The plant flowers in April and May and is related to orchids.  Vanilla is native to southeast Mexico, Vera Cruz, Mauritius, Bourbon, Madagascar, and Java.  It was introduced to England sometime around 1800.  The plant produces pods, which were traditionally collected before they were fully ripe, dried in the shade, and then covered in a coating of oil.

Vanilla has a strong, aromatic odor and warm, sweet taste.  It was used as an aromatic stimulant and was regarded as an aphrodisiac.  Vanilla was prescribed as a remedy for hysteria, low fevers, and impotency.  More regularly vanilla was used for its flavor in lozenges and medical mixtures. 

Common Holiday Nuts

Amygdalus communis

Botanical drawing of almond branch with nuts and pink flowersCommon name: Almond Tree

Amygdalus communis is a tree that grows to about twelve to sixteen feet tall with large pale red flowers. The tree flowers in March and April and is a native of Barbary.  It was cultivated in England in 1570.

The medicinal qualities of the Almond Tree were discussed as far back as antiquity being mentioned by both Theophrastus and Hippocrates. Almond oil was used internally as a laxative, to sooth coughs and horseness, and for kidney pains.  Externally the oil was used to relieve tension and muscle pain.  Almond emulsions were also prescribed for inflammatory disorders.  The London College prescribed the addition of Almond to gum Arabic to make it easier to use to relieve inflammation caused by colds.

Juglans regia

Common name: Common Walnut Tree

Botanical drawing of walnut branch with leaves and flowers, walnut dissected on bottom leftJuglans regia is a large tree that flowers in April and May.  The fruit of the tree ripens at the end of September.  The walnut tree is native to Persia but was cultivated in England during Woodville’s time. 

Unripe walnuts are bitter and in this form were used as a pickle and as a laxative.  The London College prescribed walnuts to kill parasitic worms. Walnuts were also used to treat mouth ulcers and sore throats.

William Woodville’s and Robert Bentley’s volumes are found in the Pharmacy Collection in the HSHSL’s Historical Collections.  This collection contains influential pharmacy and medical texts, as well as dispensatories, pharmacopoeias, botanicals, and herbals from around the world. The volumes in the collection date from the seventeenth to the twentieth centuries.  Many, including Robert Bentley’s text are available through the UMB Digital Archive.  Additionally, images from Woodville’s Medical Botany were used in the Library’s 2020 Coloring Book.

Happy Holidays from Historical Collections!

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Update! HSHSL Holiday Hours

HSHSL building

The HSHSL will be closed for the Winter holidays from Thursday, December 24 – Sunday, January 3.

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A Look at Winter Fruits and their Medicinal Qualities from Select Historical Botanicals

Series of handcolored botanicals: mulberry, orange, fig, orange, and plumThe Health Sciences and Human Services Library Historical Collections’ strives to provide broad access to our diverse collections both in person and digitally. Materials in our collections appear as they originally were published or created and may contain offensive or inappropriate language or images and may be offensive to users. The University of Maryland, Baltimore does not endorse the views expressed in these materials. Materials should be viewed in the context in which they were created.

Lemons, oranges, pomegranates, these are all fruits associated with winter and the holiday season.  Today we eat them as desserts or in desserts or in cocktails.  These fruits bring a sense of freshness to the winter months. While today these fruits are important for a balanced and flavorful diet; in the 17th through the early 19th centuries, these fruits were often prescribed in botanicals for a variety of medicinal purposes.  Botanicals are a form of book published to illustrate plant species and their medicinal value. The HSHSL’s Historical Collections Department is home to a large collection of Botanicals as part of our historic Pharmacy Collection. These volumes were used by the early UMB schools to teach pharmacists and doctors the value of plants for medicinal purposes.

This post looks at two botanicals available in Historical Collections. Through William Woodville’s, Medical Botany, and Robert Bentley’s, Medicinal Plants, we can uncover early medicinal uses for winter fruits, such as citrus, pomegranate, and currants.

William Woodville (1752-1805) was a physician and botanist from England.  Medical Botany… is a four-volume set published between 1790 and 1794.  It includes 300 plant illustrations by James Sowerby.  Through the 20th Century these beautiful volumes were heavily used and referenced by physicians. 

Robert Bentley (1821-1893) was a botanist from England.  Medicinal Plants… is a four-volume set published in 1880 with Henry Trimen. Trimen (1843-1896) was also an English botanist. The set includes over three-hundred plates with plant illustrations by David Blair.  A complete set of Bentley and Trimen’s Medicinal Plants have also been digitized in the UMB Digital Archive.

Two limbs from orange trees with orange and blossomsCitrus Aurantium & Citrus Vulgaris

Common names: Orange, Bitter Orange, Seville Orange, Bigarade Orange, Sweet Orange, China Orange, Portugal Orange

Citrus Vulgaris or the bitter orange was originally grown on small trees in the Mediterranean, Spain, Madeira, India, and China. The peel of this variety of orange is aromatic and was used as a tonic or stimulant.  When added to bitters it hid the taste of other medicines.

Citrus Aurantium or the sweet orange’s original home was in Northern India and Southern China.  It was introduced to Europe by the Portuguese in the 15th century and then grown abundantly in the Mediterranean, as well as Spain, Portugal, Madeira, Azores, and China.  Orange Flower Water and Oil of Neroli were both produced by the tree.  The water was used as a nervous stimulant or flavoring agent, while the oil was used in perfumes and the preparation of liqueur.  The peel also had aromatic stimulant properties and was used for its flavor or in tonic and purgative medicines. 

Botanical drawing of lemon tree limb, with lemon and blossomsCitrus Medica

Common name: Lemon Tree

Citrus Medica flowers in the summer and is native to upper parts of Asia. It was later introduced to Greece and Italy and then to Spain, Portugal and France. Lemons were used in medicine to restrain vomiting, to prevent scurvy, reduce heart palpitations, and remedy jaundice.

Botanical drawing of a quince with limb, leaves, and flowersPyrus Cydonia 

Common name: Common Quince Tree

Pyrus Cydonia produces an apple or pear-like fruit known as a quince. The fruit is divided at the center into five cells, which contains seeds.  The flowers are large, solitary, and either pale red or white. The trees are native to Austria and were known to grow wild on the banks of the Danube River. The quince has a pleasant odor and the juice was used for medicinal purposes.  The juice was cooling, it would restrict blood flow and secretion of fluids, and was useful in cases of nausea and vomiting.   

Botanical Drawing of pomegranate, limbs, leaves, and flowersPunica Granatum

Common name: Pomegranate

Punica Granatum is a bush or small tree producing fruit the size of an orange with numerous edible seeds. Pomegranate was native to North Western India, Southern Persia, and Palestine before it was introduced to the Mediterranean countries in Europe and North Africa as well as China. The root bark and rind of the fruit were used as a remedy for diarrhea and dysentery. The bark was also used to treat tapeworm and the rind and flower was used in dyeing and tanning leather.

Botanical drawings of red and black currants with limbs, blossoms, and leavesRibes Rubrum & Ribes Nigrum

Common names: Red Currant, White Currant, or Black Currant

Ribes Rubrum or the red and white currant is a shrub that grows to five or six feet in height. The fruit was used to cool the body and help thirst. It was also prescribed as an antiseptic and used as a diuretic to relieve constipation.

Ribes Nigrum or the black currant grows on a tree of six to seven feet.  Native to Britain, the fruit was larger than the red or white currant and was used for sore throats and for its diuretic power.

The Pharmacy Collection in the HSHSL’s Historical Collections contains influential pharmacy and medical texts, as well as dispensatories, pharmacopoeias, botanicals, and herbals from around the world. The volumes date from the seventeenth to the twentieth centuries.  Many, including Robert Bentley’s text are available through the UMB Digital Archive.  Additionally, images from Woodville’s Medical Botany were used in the Library’s 2020 Coloring Book.

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HSHSL Holiday Closure

HSHSL building

The library building and services will be closed for the winter holidays from Friday, December 25 through Sunday, January 3. On Thursday, December 24, the library building will closed to library users. On December 24, virtual services are available at hshsl@umaryland.edu.

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December Connective Issues Newsletter Now Available!

In this edition:

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1984 HS/HSL Cookbook Looks to Spice up your Thanksgiving and Holidays

The Health Sciences and Human Services Library Historical Collections’ strives to provide broad access to our diverse collections both in person and digitally. Materials in our collections appear as they originally were published or created and may contain offensive or inappropriate language or images and may be offensive to users. The University of Maryland, Baltimore does not endorse the views expressed in these materials. Materials should be viewed in the context in which they were created.

Title page for 1984 Health Sciences Library Cookbook

Still looking for that perfect Thanksgiving dish?  Holiday dessert?  Appetizer to try during a virtual office event?  Or perhaps you are tired of making banana or sourdough bread?  Drop that phone, cancel your GrubHub order!  The HS/HSL is here to help!  In November 1984 the staff of what was then the Health Sciences Library produced their very own Cookbook.

Organized like many professionally published cookbooks, the volume includes appetizers, soups, and salads; main courses; side dishes; and of course, plenty of desserts contributed by library staff members.  If you have in fact tried all of the internet’s sourdough bread recipes maybe it is time to try Systems and Automation Librarian, Gary Freiburger’s, “Dilly Bread.”

Recipe card for Dill Bread

Got a craving for cheesecake? The HSL’s Cookbook has that covered!  There are five cheesecake recipes available to try.  Which one will be your favorite?  Perhaps it will be Patty Hinegardner’s no-bake “Cheese Cake.”  If you try it make sure you let the current Associate Director of Resources know what you thought of her creation – that’s right Patty is still a big part of the HS/HSL team!

Recipe card for No Bake Cheese Cake

Perhaps you want to bring a bit of the tropics to your holiday table.  Again, this cookbook saves the day with two Pina Colada recipes – a pie by School of Medicine Liaison Librarian, Paula Raimondo and a cake—complete with dark rum—by Access Services staff member, Loie Heimbach!

Recipe Card for Pina Colada Cake

As the weather turns colder and the winter months arrive, maybe it’s time for a new soup recipe?  Try Mary Ann Williams’ Cream of Crab Soup.  Mary Ann, the current Research, Education & Outreach Librarian for the School of Dentistry would be thrilled to see her recipe’s used by today’s UMB campus members! 

Recipe card for Cream of Crab Soup

The HS/HSL looks forward to seeing your photographs on Instagram, Facebook, and Twitter so be sure to tag us @umbhshsl.  We look forward to hearing how our recipes inspire your creativity and build new socially distanced holiday traditions with your loved ones.  Happy Thanksgiving from the HS/HSL!

Check out the complete cookbook here: http://hdl.handle.net/10713/5952.  

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